Analyse structural correlations with PDBcor

The form allows to upload a protein PDB file. Structural correlations will be extracted and displayed.
  • Please, make sure that each calculated protein conformer is a separate model in your PDB file noted always as chain A.
  • Please, make sure that your PDB file contains at least 2 models.
  • Preferably remove all ligands and non-standard amino acids and make sure that in your PDB file there are no gaps in sequence numbering.

Dataset information:
Number of states
Number of protein states (deafult=2)
Mode
Mode of correlations (deafult=backbone)1
Noise amplitude
Amplitude of the thermal motion (default=0.5)
Number of noise simulations
Number of thermal simulations (default=5)
Data upload:
Path to PDB file*


Please wait, your PDB file is being processed
1 Backbone mode calculates correlations from the protein backbone (typically better resolved for NMR ensembles), sidechain mode calculates correlations from the protein sidechain (typically less well resolved for NMR ensembles), combined mode calculates correlations from both.